Publications
 

 

Title Authors Source Year Links
HCET: Hierarchical Clinical Embedding with Topic Modeling on Electronic Health Records for Predicting Depression Meng Y, Speier W, Ong M, Arnold CW IEEE Journal of Biomedical and Health Informatics 2020 In press
Toward Heterogeneous Information Fusion: Bipartite Graph Convolutional Networks for In Silico Drug Repur-posing Wang Z, Zhou M, Arnold CW Bioinformatics 2020 In press
An electronic form for reporting results of targeted prostate biopsy: Urology Integrated Diagnostic Report (Uro-IDR) Guorgui J, Kinnaird A, Jayadevan R, Priester A, Arnold CW, Marks LS Urology 2020 Web
LSTM Network for Prediction of Hemorrhagic Transformation in Acute Stroke Yu Y, Parsi B, Speier W, Arnold CW, Lou M, Scalzo F International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2019 Web
Assessment of Heart Failure Patients' Interest in Mobile Health Apps for Self-Care: Survey Study A Sohn, Speier W, Lan E, Aoki K, Fonarow G, Ong M, Arnold CW Journal of Medical Internet Research Cardio 2019 PDF | Web
A Machine Learning Approach to Classifying Self-Reported Health Status in a cohort of Patients with Heart Disease using Activity Tracker Data Meng Y, Speier W, Shufelt C, Joung S, Van Eyk JE, Bairey Merz CN, Lopez M, Spiegel B, Arnold CW IEEE Journal of Biomedical and Health Informatics 2019 PDF | Web
Estimating the Health-Related Quality of Life of Twitter Users Using Semantic Processing Sarma KV, Spiegel B, Reid M, Chen S, Merchant R, Seltzer E, Arnold CW Proc. of the International Medical Informatics Association 2019 Meeting (MEDINFO) 2019 PDF | Web
An Attention-Based Multi-Resolution Model for Prostate Whole Slide Image Classification and Localization Li J, Li W, Gertych A, Knudsen BS, Speier W, Arnold CW Conference on Computer Vision and Pattern Recognition (CVPR) Towards Causual, Explainable and Universal Medical Visual Diagnosis Workshop 2019 PDF
Semi-Supervised Learning Based on Generative Adversarial Network: a Comparison Between Good GAN and Bad GAN Approach Li W, Wang Z, Li J, Polson J, Speier W, Arnold CW Conference on Computer Vision and Pattern Recognition (CVPR) Weakly Supervised Learning for Real-World Computer Vision Applications Workshop 2019 PDF
Predicting Ischemic Stroke Tissue Fate Using a Deep Convolutional Neural Network on Source MR Perfusion Imaging Ho KC, Scalzo F, Sarma KV, Speier W, El-Saden S, Arnold CW Journal of Medical Imaging 2019 PDF | Web
A Machine Learning Approach for Classifying Ischemic Stroke Onset Time from Imaging Ho KC, Speier W, Zhang H, Scalzo F, El-Saden S, Arnold CW IEEE Transactions on Medical Imaging 2019 PDF | Web
Prediction of Clinically Significant Prostate Cancer in MR/Ultrasound Guided Fusion Biopsy using Multiparametric MRI Shi W, Sarma KV, Raman AG, Priester AM, Natarajan S, Speier W, Raman S, Marks L, Arnold CW Neural Information Processing Systems (NeurIPS) Medical Imaging Meets NeurIPS Workshop 2018 PDF
Semi-supervised Rare Disease Detection Using Generative Adversarial Network Li W, Wang Y, Arnold CW, Zhao E, Yuan Y Neural Information Processing Systems (NeurIPS) Machine Learning for Health (ML4H) Workshop 2018 PDF | Web
Path R-CNN for Prostate Cancer Diagnosis and Gleason Grading of Histological Images Li W, Li J, Sarma KV, Ho KC, Shen S, Knudsen BS, Gertych A, Arnold CW IEEE Transactions on Medical Imaging 2018 PDF | Web
An EM-based Semi-supervised Deep Learning Approach for Semantic Segmentation of Histopathological Images from Radical Prostatectomies Li J, Speier W, Ho KC, Sarma KV, Gertych A, Knudsen B, Arnold CW Computerized Medical Imaging and Graphics 2018 PDF | Web
Evaluating Utility and Compliance in a Patient-based eHealth Study using Continuous-time Heart Rate and Activity Trackers. Speier W, Dzubur E, Zide M, Shufelt C, Joung S, Van Eyk JE, Merz CNB, Lopez M, Spiegel B, Arnold CW Journal of the American Medical Informatics Association 2018 PDF | Web
Semantic Segmentation for Prostate Cancer Grading by Convolutional Neural Networks Ing N, Ma Z, Li J, Salemi H, Arnold CW, Knudsen B, Gertych A SPIE Medical Imaging 2018 PDF | Web
A Multi-scale U-Net for Semantic Segmentation of Histological Images from Radical Prostatectomies
Finalist, Best Student Paper Award
Li J, Sarma KV, Ho KC, Gertych A, Knudsen B, Arnold CW Proc. of the American Medical Informatics Association (AMIA) Annual Symposium 2017 PDF | Web
Classifying Acute Ischemic Stroke Onset Time using Deep Imaging Features
Winner, Best Student Paper Award
Ho KC, Speier W, El-Saden S, Arnold CW Proc. of the American Medical Informatics Association (AMIA) Annual Symposium 2017 PDF | Web
Source-LDA: Enhancing Probabilistic Topic Models using Prior Knowledge Sources Wood J, Tan P, Das A, Wang W, Arnold CW Proc. of the IEEE International Conference on Data Engineering 2016 PDF | Web
A Temporal Deep Learning Approach for MR Perfusion Parameter Estimation in Stroke Ho KC, Scalzo F, Sarma K, El-Saden S, Arnold CW Proc. of the International Conference on Pattern Recognition 2016 PDF | Web
Using Phrases and Document Metadata to Improve Topic Modeling of Clinical Reports Speier W, Ong MK, Arnold CW Journal of Biomedical Informatics 2016 PDF | Web
Consumers' Patient Portal Preferences and Health Literacy: A Survey Using Crowdsourcing McNamara M, Caswell K, Peterson E, Aberle DR, Bui AAT, Arnold CW Journal of Medical Internet Research Research Protocols 2016 PDF | Web
Evaluating Topic Model Interpretability from a Primary Care Physician Perspective Arnold CW, Oh A, Chen X, Speier W Computer Methods and Programs in Biomedicine 2016 PDF | Web
RadPath: A Web-Based System for Integrating and Correlating Radiology and Pathology Findings During Cancer Diagnosis Arnold CW, Wallace WD, Chen S, Oh A, Abtin F, Genshaft S, Binder S, Aberle D, Enzmann D Academic Radiology 2016 PDF | Web
Imaging-histologic Discordance at Percutaneous Biopsy of the Lung Oh A, Arnold CW, Vangala S, Wallace WD, Genshaft S, Sarma K, Aberle D Academic Radiology 2015 PDF | Web
Patient Portal Preferences: Perspectives on Imaging Information McNamara M, Arnold CW, Sarma K, Garon E, Aberle D, Bui AAT Journal of the Association for Information Science and Technology 2013 PDF | Web
Predicting Discharge Mortality after Acute Ischemic Stroke
Finalist, Best Student Paper Award
Ho KC, Speier W, El-Saden S, Liebeskind DS, Saver JL, Bui AAT, Arnold CW Proc. of the American Medical Informatics Association (AMIA) Annual Symposium 2014 PDF | Web
A Data Model for Personalized Patient Health Guidelines: An Exploratory Study McNamara M, Sarma K, Aberle D, Bui AAT, Arnold CW Proc. of the American Medical Informatics Association (AMIA) Annual Symposium 2014 PDF | Web
Imaging Informatics for Consumer Health: Towards a Radiology Patient Portal Arnold CW, McNamara M, Chen S, Taira R, Bui AAT Journal of the American Medical Informatics Association 2013 PDF | Web
A Topic Model of Clinical Reports Arnold CW, Speier W ACM Special Interest Group on Information Retrieval 2012 PDF | Web
Robust Skull Stripping of Clinical Glioblastoma Multiforme Data Speier W, Iglesias JE, El-Kara L, Tu Z, Arnold CW International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2011 PDF | Web
Clinical Case-based Retrieval using Latent Topic Analysis Arnold CW, El-Saden SM, Bui AAT, Taira RK Proc. of the American Medical Informatics Association (AMIA) Annual Symposium 2010 PDF | Web